PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g064470.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SBP
Protein Properties Length: 168aa    MW: 19060.1 Da    PI: 9.4437
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g064470.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP39.71.3e-12771064978
                         EEETTT--SS--S-STTTT-------S--- CS
                 SBP  49 fhelsefDeekrsCrrrLakhnerrrkkqa 78 
                          h l+efDe+krsCrrrL +h +rrrk+++
  Sopim04g064470.0.1  77 VHVLEEFDEGKRSCRRRLTGHKKRRRKTHP 106
                         6**************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114110.8446104IPR004333Transcription factor, SBP-box
Gene3DG3DSA:1.20.1050.101.7E-62862IPR010987Glutathione S-transferase, C-terminal-like
PfamPF031103.3E-777103IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-1077109IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MKSKDSSDCT EQALFDELKA LEEHLKAHMS LAPKMYHLEV ALGHFKKWSV TESLSHVRNY  60
MKLDPFLLPV VQGSILVHVL EEFDEGKRSC RRRLTGHKKR RRKTHPENVA NGASVNDEGN  120
YLLISLLRIL ANVQCNSLYG FHGFPAIYSF CMTKDVGKIN KVIAFTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mye_A5e-21163110185Dehydroascorbate reductase family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197102KKRRRK
298104KRRRKTH
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145271e-153CU914527.4 S.lycopersicum DNA sequence from clone LE_HBa-213A3 on chromosome 4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3Q7G5S71e-122A0A3Q7G5S7_SOLLC; Uncharacterized protein
STRINGSolyc04g064470.1.11e-123(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1580933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.13e-12squamosa promoter-binding protein-like 12