PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim04g081370.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 452aa    MW: 49014.6 Da    PI: 9.7313
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim04g081370.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.9e-06203225223
                         EETTTTEEESSHHHHHHHHHH.T CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          CpdCg++F+  ++L++H+ + H
  Sopim04g081370.0.1 203 ACPDCGEVFPKIESLEHHQAVkH 225
                         6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.725202230IPR007087Zinc finger, C2H2
PROSITE patternPS000280202225IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.90.228.103.1E-7227447IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563992.01E-18227447No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MKKRTSSTIA LFFSHFLALF LMALLTFLPE TSEKNQPSKR RKKQQKQNKE KQKQPSSWDQ  60
FKNLLTCKQI ENSTVHDPAS KNPPPSAAAA APAGAYSKLS SCSSICSFRD VVHGNTRVVH  120
RADNSPESSS LGQETRLLSK NKTSHHDPSS SSSRSLARSN GNGSSTYTTS SRGMQFRKLS  180
GCYECHMIVD PSRYPLPRST ICACPDCGEV FPKIESLEHH QAVKHAVSEL GPEDSSRNIV  240
EIIFKSSWLK KDNPICKIER ILKVHNTKRT IQRFEDCRDA VKIHAVATGK KNPRCAADGN  300
ELLRFYCTSL TCVLGARGSS SLCGSVPGCG VCTTIRHGFQ GNKTSGVRTT ASSGRAHDCL  360
GSGMARRRAM IVCRVIAGRV KQNVGASPTK EEENCSGSGS GSGSGLSATG STIYNSVAGH  420
VGIYSNLEEL YVFNPRAILP CFVVIYEALE S*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1937780.0AC193778.1 Solanum lycopersicum chromosome 4 clone C04HBa0101P06, complete sequence.
GenBankCU2225380.0CU222538.4 S.lycopersicum DNA sequence from clone LE_HBa-331L22 on chromosome 4, complete sequence.
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238353.10.0uncharacterized protein LOC101261325
TrEMBLK4BVL60.0K4BVL6_SOLLC; Uncharacterized protein
STRINGSolyc04g081370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51952334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-147C2H2-like zinc finger protein