PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim05g005240.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

YABBY

Protein Properties

Length: 193aa MW: 21514.5 Da PI: 8.157

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim05g005240.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	179.1	2.5e-55	7	158	2	165
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslf.kvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekee 90 ++f+ + +CyvqC++C+til+vsvP +sl kvvtvrCGhCt+lls+nl k s +l a+ ++ + +++ ++++++++ n k ++ Sopim05g005240.0.1 7 HLFELQDTICYVQCGYCTTILLVSVPCSSLCnKVVTVRCGHCTTLLSLNLIKPSlHLFASFDQ---THQPPEVDKDETDDANKKNSNS--- 91 789999*********************973699**********98876266666665...4445444444333332222111... PP YABBY 91 sastsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPk 165 + ++ e++ +p + v++PPekrqr+Psayn+fikeei+r+k+ P+++h++afs+aaknWahfP+ Sopim05g005240.0.1 92 -----DEE---DQLENNVLPLNQVVNKPPEKRQRAPSAYNCFIKEEIKRLKTLYPNMTHKQAFSTAAKNWAHFPP 158 .....111...222334455555689*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.6E-55	12	159	IPR006780	YABBY protein
SuperFamily	SSF47095	1.96E-8	106	160	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.3E-5	109	160	IPR009071	High mobility group box domain
CDD	cd00084	0.00307	117	160	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MSTLNNHLFE LQDTICYVQC GYCTTILLVS VPCSSLCNKV VTVRCGHCTT LLSLNLIKPS 60 LHLFASFDQT HQPPEVDKDE TDDANKKNSN SDEEDQLENN VLPLNQVVNK PPEKRQRAPS 120 AYNCFIKEEI KRLKTLYPNM THKQAFSTAA KNWAHFPPSQ HRGGCSLGER KMAKVSAARN 180 SMVPRDSNGL IP*

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC188781	9e-67	AC188781.2 Lycopersicon esculentum cv. Heinz 1706, chromosome 5 BAC clone C05SLm0005B15 complete sequence.
GenBank	HG975517	9e-67	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010321151.2	1e-143	axial regulator YABBY 4
Swissprot	Q9LDT3	1e-55	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A3G4YK59	1e-142	A0A3G4YK59_SOLCE; INNER NO OUTER
TrEMBL	A0A3G4YK72	1e-142	A0A3G4YK72_SOLPI; INNER NO OUTER
TrEMBL	A0A3Q7G929	1e-142	A0A3Q7G929_SOLLC; Uncharacterized protein
STRING	Solyc05g005240.1.1	1e-143	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	5e-58	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]