PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim05g005370.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YB

Protein Properties

Length: 225aa MW: 24791.2 Da PI: 4.3296

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim05g005370.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	95.7	4e-30	54	134	2	84
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplk 84 +eqd+++P nv+rim+ + P++ kis+dak t+ +c+sefi fvt ea+ +cqre+r+ti+ +d+ w + ++Gf+dy+epl Sopim05g005370.0.1 54 QEQDQVIP--NVARIMQSTHPSHVKISDDAKRTIYHCMSEFICFVTYEANAHCQREQRNTITVEDMDWVINKFGFDDYIEPLP 134 57788776..***********************************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.0E-25	54	133	IPR009072	Histone-fold
SuperFamily	SSF47113	6.87E-22	61	136	IPR009072	Histone-fold
Pfam	PF00808	2.1E-17	62	121	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MDNGNHLGGS GNGGFHSYGR SPQPTPADPP SPDTEMSLEL PAHLNQEVVE IISQEQDQVI 60 PNVARIMQST HPSHVKISDD AKRTIYHCMS EFICFVTYEA NAHCQREQRN TITVEDMDWV 120 INKFGFDDYI EPLPYNFPPN SEDDGGECGS LTRESLLKRP MVDTASSSNI TSYNVPSNFP 180 MAHHHFVYPP PMGNGDMQGR ASTSQCAGAS VDTDVESPME EDKE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-29	54	133	7	88	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC204082	0.0	AC204082.1 Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLe0086I08, complete sequence.
GenBank	HG975517	0.0	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010320572.1	1e-169	nuclear transcription factor Y subunit B-6-like
TrEMBL	A0A3Q7GBK0	1e-167	A0A3Q7GBK0_SOLLC; Uncharacterized protein
STRING	Solyc05g005370.1.1	1e-168	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA14016	4	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	3e-32	NF-YB family protein