PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim05g005440.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NF-YB

Protein Properties

Length: 209aa MW: 23157.9 Da PI: 4.9481

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim05g005440.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	126.4	1.1e-39	59	152	2	95
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 re+drf+Pi+nv+rim+k+lP n +is+ k ++qecvsefi+f+t+ea++ cq ++rkti+++dll al +G++dyve+l +yl++yre Sopim05g005440.0.1 59 REHDRFMPITNVIRIMRKILPPNVQISDGFKLMIQECVSEFIGFITGEANNCCQLDQRKTITAEDLLRALDRFGYDDYVETLALYLHRYRE 149 89***************************************************************************************** PP NF-YB 93 leg 95 +g Sopim05g005440.0.1 150 YDG 152 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.8E-38	54	154	IPR009072	Histone-fold
SuperFamily	SSF47113	2.26E-30	62	152	IPR009072	Histone-fold
Pfam	PF00808	5.3E-18	64	128	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.1E-10	92	110	No hit	No description
PRINTS	PR00615	3.1E-10	111	129	No hit	No description
PRINTS	PR00615	3.1E-10	130	148	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MDDGNLVGSG DGGFHSYCRS PQRTSARSPS PDMEMSLELP AHLEQTIAAN VEHSERTIRE 60 HDRFMPITNV IRIMRKILPP NVQISDGFKL MIQECVSEFI GFITGEANNC CQLDQRKTIT 120 AEDLLRALDR FGYDDYVETL ALYLHRYREY DGGCGSTRRA RLLLRSSMVN PASGCNLTSY 180 QGDASNGSTS QGDAVDIEVQ SPAKETKE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	5e-43	54	149	2	97	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. Plays a role in the regulation of the embryogenesis. Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000269\|PubMed:12509518, ECO:0000269\|PubMed:17322342}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC204082	0.0	AC204082.1 Solanum lycopersicum cv. Heinz 1706, chromosome 5 BAC clone C05SLe0086I08, complete sequence.
GenBank	HG975517	0.0	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027772814.1	1e-147	nuclear transcription factor Y subunit B-1-like isoform X1
Refseq	XP_027772815.1	1e-147	nuclear transcription factor Y subunit B-1-like isoform X1
Swissprot	Q84W66	8e-45	NFYB6_ARATH; Nuclear transcription factor Y subunit B-6
TrEMBL	A0A3Q7GBK9	1e-128	A0A3Q7GBK9_SOLLC; Uncharacterized protein
STRING	Solyc05g005440.1.1	1e-155	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA111	24	356

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.1	4e-47	nuclear factor Y, subunit B6

Publications ? help Back to Top
Jia H,McCarty DR,Suzuki M Distinct roles of LAFL network genes in promoting the embryonic seedling fate in the absence of VAL repression. Plant Physiol., 2013. 163(3): p. 1293-305 [PMID:24043445] Kim HU, et al. Ectopic overexpression of castor bean LEAFY COTYLEDON2 (LEC2) in Arabidopsis triggers the expression of genes that encode regulators of seed maturation and oil body proteins in vegetative tissues. FEBS Open Bio, 2013. 4: p. 25-32 [PMID:24363987] Gnesutta N,Saad D,Chaves-Sanjuan A,Mantovani R,Nardini M Crystal Structure of the Arabidopsis thaliana L1L/NF-YC3 Histone-fold Dimer Reveals Specificities of the LEC1 Family of NF-Y Subunits in Plants. Mol Plant, 2017. 10(4): p. 645-648 [PMID:27871811] Li D, et al. MYB89 Transcription Factor Represses Seed Oil Accumulation. Plant Physiol., 2017. 173(2): p. 1211-1225 [PMID:27932421] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Han JD, et al. Evolutionary Analysis of the LAFL Genes Involved in the Land Plant Seed Maturation Program. Front Plant Sci, 2017. 8: p. 439 [PMID:28421087]