PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim05g006980.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 289aa MW: 33417 Da PI: 4.6924

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim05g006980.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.2e-18	70	123	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++ ++q++ Le+ Fe ++++ e++ +LA++lgL+ rq+ +WFqNrRa++k Sopim05g006980.0.1 70 KKRRLLPNQVQFLEKSFEVDNKLEPERKVQLANELGLQPRQIAIWFQNRRARYK 123 45578899*********************************************9 PP
2	HD-ZIP_I/II	124.5	4.9e-40	69	160	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl +qv++LE+sFe ++kLeperKv+la+eLglqprq+a+WFqnrRAR+ktk lEkdy+aLk+++d+lk++ ++L ke+e+Lr+e+ Sopim05g006980.0.1 69 EKKRRLLPNQVQFLEKSFEVDNKLEPERKVQLANELGLQPRQIAIWFQNRRARYKTKVLEKDYDALKASFDKLKADYDTLFKENEDLRNEV 159 69**************************************************************************************998 PP HD-ZIP_I/II 92 k 92 + Sopim05g006980.0.1 160 H 160 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.84E-18	57	125	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.07	65	125	IPR001356	Homeobox domain
SMART	SM00389	4.2E-18	68	129	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-15	70	123	IPR001356	Homeobox domain
CDD	cd00086	2.39E-16	70	125	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.6E-18	73	133	IPR009057	Homeodomain-like
PRINTS	PR00031	1.0E-5	96	105	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	100	123	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	105	121	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.8E-16	125	166	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MEVGRVINEK LSHCLWMSNS SPSFHGSVSM VNFEDVGRGE VSKERSFFPG IDKEETSNDD 60 YDSCYHQPEK KRRLLPNQVQ FLEKSFEVDN KLEPERKVQL ANELGLQPRQ IAIWFQNRRA 120 RYKTKVLEKD YDALKASFDK LKADYDTLFK ENEDLRNEVH LLTQKLHIRE KGKENSEQSE 180 PISPIDTQEA QKATTPIVVT SNVPKLMCKQ EDATSAKSDV IDSDSPHYTD GNHSSNVFEQ 240 EPSDFSRDED DNLSKNFLYF PEIGDQIQAN SCNLSFQIED QPCWFWQY*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC238747	0.0	AC238747.2 Solanum lycopersicum chromosome 05 clone C05SLe0011J24, complete sequence.
GenBank	HG975517	0.0	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238764.1	0.0	homeobox-leucine zipper protein HAT5
TrEMBL	A0A3Q7GE20	0.0	A0A3Q7GE20_SOLLC; Uncharacterized protein
STRING	Solyc05g006980.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA825	24	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	3e-45	homeobox 1