PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g007420.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 384aa    MW: 42715.4 Da    PI: 7.0482
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g007420.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.86.3e-41842572137
                 TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg... 88 
                         ++k ++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+ +  + s +ss ++s s+   
  Sopim05g007420.0.1  84 TKKPTTTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANYSsLNISLRSSRHHSASNyla 174
                         78999***********************************************************999997776666666666666666677 PP

                 TCP  89 ..................................kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137
                                                            ++ +a+++  ++++++ + n ++  r k r++ ++  +++ +++n l+
  Sopim05g007420.0.1 175 hnhnnfghvyhdrnyfngvglfssennsffpsgnLNMLQAKEELCDDHDDNDNDNDNNTGRIKRRSEDQDLLQNNYHMSNMLQ 257
                         77777899999999999999999999999999863333333444555555556677778899999998888888888887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.1E-4188248IPR005333Transcription factor, TCP
PROSITE profilePS5136927.63690144IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
METGHHHHDN IGNSIQRLNF PLQLLEKRDE VDHTTTICSS SLQLHPYNPT SLHMMTTSSS  60
DAPCVNHNQK SKTHQDKKQQ PQQTKKPTTT KDRHTKVDGR GRRIRMPATC AARVFQLTRE  120
LGHKSDGETI EWLLQQAEPA VIAATGTGTI PANYSSLNIS LRSSRHHSAS NYLAHNHNNF  180
GHVYHDRNYF NGVGLFSSEN NSFFPSGNLN MLQAKEELCD DHDDNDNDND NNTGRIKRRS  240
EDQDLLQNNY HMSNMLQSST YGSIPASHQI GQIPATTLYM MTNNNNNNNN NSSHHHDLNN  300
CSMWGSSSNN NDSIENSNIR GGILNFMNFH QPILGTRGDG GGTAAEGQWG MLTAAMNSYR  360
QSGGHASGSS NQRNEGDDHQ HHS*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2123060.0AC212306.2 Solanum lycopersicum cv. Heinz 1706, chromosome 05 BAC clone C05SLe0066O01,complete sequence.
GenBankGQ4963400.0GQ496340.1 Solanum lycopersicum TCP transcription factor 23 (TCP23) mRNA, complete cds.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234594.10.0TCP transcription factor 23
RefseqXP_010320551.10.0TCP transcription factor 23 isoform X1
RefseqXP_010320552.10.0TCP transcription factor 23 isoform X1
RefseqXP_010320553.10.0TCP transcription factor 23 isoform X1
TrEMBLG3BGW20.0G3BGW2_SOLLC; TCP transcription factor 23
STRINGSolyc05g007420.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139471214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.18e-41TCP family protein