PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g009320.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 255aa    MW: 28068.7 Da    PI: 6.273
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g009320.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260927e-294106198
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C+++C l+p +     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +Pv+G+vg++ ++++q
  Sopim05g009320.0.1   4 SCNGCRVLRKGCSENCSLRPSLqwiksPDSQANATVFLAKFYGRAGLINLINAGPQHLRPAIFRSLLYEACGRIINPVNGSVGLMCSGNWQ 94 
                         6****************************************************************************************** PP

              DUF260  87 leqlkaelallk 98 
                          +q ++e +l +
  Sopim05g009320.0.1  95 RCQDAVESVLKG 106
                         ***999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2843109IPR004883Lateral organ boundaries, LOB
PfamPF031953.3E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS LRPSLQWIKS PDSQANATVF LAKFYGRAGL INLINAGPQH  60
LRPAIFRSLL YEACGRIINP VNGSVGLMCS GNWQRCQDAV ESVLKGSTIM QVPINSDDDN  120
NSTDQIVPLK GCDIRHVSKY NSTNSDNQQV KTRNGRLKRK GSTFDSAASA SVEVEAAEEY  180
LLKNQPPLKF SITGWDQFEE REDEMIKRSQ SHDSFSVETV EPTLLVNRVD PVKLEEDGDL  240
LGLDLTLGLM SPTG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238927.10.0LOB domain-containing protein 42
SwissprotQ9M8861e-70LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A3Q7GEH20.0A0A3Q7GEH2_SOLLC; Uncharacterized protein
STRINGSolyc05g009320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.13e-71LOB domain-containing protein 41