PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g013370.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26476.7 Da    PI: 5.4577
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g013370.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.32.2e-1411491250
                        HHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF 12 tfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         + k +++i KK  ELS+LCd++++vi++ ++gk+ +++
  Sopim05g013370.0.1 11 NYKKKKETIKKKTRELSILCDVKACVILVDPNGKVDTWP 49
                        689***********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006610.33152IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-13773IPR002100Transcription factor, MADS-box
PfamPF003191.8E-11948IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEKKNKGNML NYKKKKETIK KKTRELSILC DVKACVILVD PNGKVDTWPE NPTDFNPIIQ  60
SYKENLCHGK RKRIDDDGCF EKKSKKNHAL FCDDDENQWL NDVFRESNES LLVKLNSKLE  120
AVDRRIEFLK MMNYGNGVVG GSSSSAKESL LANQETHNRL ENSNAYNQET EIAMAAEFWV  180
IGGDESANDR GKEIDFLRDN ATVNNLNNVQ NFGYDDHLWP VIAASEFSTC IN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2327030.0AC232703.2 Solanum lycopersicum chromosome 05 clone C05HBa0190L02, complete sequence.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010321181.11e-172agamous-like MADS-box protein AGL82
TrEMBLA0A3Q7H8V21e-171A0A3Q7H8V2_SOLLC; Uncharacterized protein
STRINGSolyc05g013370.1.11e-172(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1595856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.15e-07AGAMOUS-like 103