PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g013420.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 186aa    MW: 20825.3 Da    PI: 9.1312
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g013420.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.1e-123378247
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        grW+++E+  ++ +  + G+g+W++Ia+++  +Rt+ q+ s+ qky
  Sopim05g013420.0.1 33 GRWSEDEQRAFLIGLDKVGKGNWTRIAKEFVPTRTPTQVASHAQKY 78
                        8******************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.7942783IPR017930Myb domain
SuperFamilySSF466897.18E-153084IPR009057Homeodomain-like
SMARTSM007174.0E-103181IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-123180IPR009057Homeodomain-like
PfamPF002496.9E-113378IPR001005SANT/Myb domain
CDDcd001672.97E-93479No hitNo description
TIGRFAMsTIGR015577.6E-143482IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MANTIKLFGA EIHVNNVEES TSCCTSRRSS KGGRWSEDEQ RAFLIGLDKV GKGNWTRIAK  60
EFVPTRTPTQ VASHAQKYFD RQKENKVNKH KKRSVFDIDL DEESSNTRLQ LLSKRAYNKK  120
DHKEILNEES PISAMPIRYI LPPNGSYACY EFNFMSISST NATPVVRGAS SQSSSASTDD  180
LDLSL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2327030.0AC232703.2 Solanum lycopersicum chromosome 05 clone C05HBa0190L02, complete sequence.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239123.11e-138transcription factor KUA1
TrEMBLA0A3Q7H8W61e-136A0A3Q7H8W6_SOLLC; Uncharacterized protein
STRINGSolyc05g013420.1.11e-137(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13677916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-23MYB_related family protein