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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sopim05g014930.0.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 94aa MW: 10719.7 Da PI: 4.8609 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 28.7 | 4.3e-09 | 54 | 92 | 2 | 41 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkr 41
Yn+YA GF vrks+++++ n+e+t+r f Cs+egk+
Sopim05g014930.0.1 54 AYNSYALAKGFGVRKSAKTYN-INKEVTRRLFLCSCEGKS 92
5***************99998.8999************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 2.8E-6 | 54 | 92 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 94 aa Download sequence Send to blast |
MEETHIDKGS SLQEDSNVND NEYSTKANNV YSINKNFSFE IDMKFNFEEE SYNAYNSYAL 60 AKGFGVRKSA KTYNINKEVT RRLFLCSCEG KSD* |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG975517 | 1e-130 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019266793.1 | 3e-26 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
| TrEMBL | K4BYL1 | 2e-60 | K4BYL1_SOLLC; Uncharacterized protein | ||||
| STRING | Solyc05g014930.1.1 | 3e-61 | (Solanum lycopersicum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA1726 | 9 | 31 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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