PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim05g021090.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 280aa MW: 32535.4 Da PI: 7.5875

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim05g021090.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.4	1.3e-48	17	141	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 pGfrFhPtdeel+ +yL++kve+k++++ e i+++diyk++PwdLp ka++ke+y+F+ r +ky+++ r+nr+tk g+Wkatg dk+v Sopim05g021090.0.1 17 LPGFRFHPTDEELIGFYLRRKVENKRISM-ELIRHIDIYKYDPWDLP---KADDKEMYYFCMRGRKYKNSVRPNRVTKGGFWKATGIDKPV 103 69*************************.99***********...56899******************************** PP NAM 93 lskkgel..vglkktLvfykgrapkgektdWvmheyrl 128 +s++++ +glkk Lv+y+g+a kg+ktdW+mhe+rl Sopim05g021090.0.1 104 YSSTTKCiiIGLKKCLVYYRGSAGKGTKTDWMMHEFRL 141 84433459**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.24E-53	15	162	IPR003441	NAC domain
PROSITE profile	PS51005	52.095	16	162	IPR003441	NAC domain
Pfam	PF02365	3.7E-24	18	141	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MVDEIKTMSK EEEDVILPGF RFHPTDEELI GFYLRRKVEN KRISMELIRH IDIYKYDPWD 60 LPKADDKEMY YFCMRGRKYK NSVRPNRVTK GGFWKATGID KPVYSSTTKC IIIGLKKCLV 120 YYRGSAGKGT KTDWMMHEFR LPPTSNTNQQ AEVWTLCRIF KRSSSTYTRS SYNTQEVKHP 180 IGDASSKACS LESDENSTDH DHSNSFRDTS FPHQNYNNYV AQMDETRNQQ NPIPHESTFP 240 SSSSISFWNT NSTQEDYLFG DHGNKWDDLK SIVDLATMM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-46	18	166	19	169	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-46	18	166	19	169	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-46	18	166	19	169	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-46	18	166	19	169	NO APICAL MERISTEM PROTEIN
4dul_A	3e-46	18	166	19	169	NAC domain-containing protein 19
4dul_B	3e-46	18	166	19	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975517	0.0	HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019069297.1	0.0	transcription factor JUNGBRUNNEN 1-like isoform X1
Swissprot	Q9SK55	1e-86	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A3Q7GJY2	0.0	A0A3Q7GJY2_SOLLC; Uncharacterized protein
STRING	Solyc05g021090.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1697	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-81	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]