PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g054650.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 153aa    MW: 17388 Da    PI: 9.4923
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g054650.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.60.000842749123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ Fs+   L  H  +H
  Sopim05g054650.0.1 27 FECKTCNRQFSSFQALGGHRASH 49
                        89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.03E-82594No hitNo description
PfamPF139129.6E-132651IPR007087Zinc finger, C2H2
SMARTSM003550.22749IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2422754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
PfamPF139121.2E-107196IPR007087Zinc finger, C2H2
PROSITE profilePS501579.2037296IPR007087Zinc finger, C2H2
SMARTSM003550.277294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MANYLMLFSR QENHFNTMVN NSPSRVFECK TCNRQFSSFQ ALGGHRASHK KPRLMGEMNF  60
HLPISPPKPK THECSICGLE FPIGQALGGH MRRHRGMLNE NNNNNNQVPN HDVMKKSSNN  120
PRVLCLDLNL TPLENDLEFK LKKANPIVDC FL*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2056810.0AC205681.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0025A19, complete sequence.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239776.11e-109zinc finger protein ZAT11-like
SwissprotQ9SLD43e-36ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A3Q7GNV71e-108A0A3Q7GNV7_SOLLC; Uncharacterized protein
STRINGSolyc05g054650.1.11e-108(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.12e-38C2H2 family protein