PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g054660.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 168aa    MW: 19148.7 Da    PI: 9.7743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g054660.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.000962749123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ Fs+   L  H  +H
  Sopim05g054660.0.1 27 FECKTCNRQFSSFQALGGHRASH 49
                        89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.83E-82594No hitNo description
PfamPF139121.1E-122651IPR007087Zinc finger, C2H2
SMARTSM003550.22749IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.2422754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
PfamPF139121.4E-107196IPR007087Zinc finger, C2H2
PROSITE profilePS501579.2037296IPR007087Zinc finger, C2H2
SMARTSM003550.277294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MTNYLMLFSS QENHFNTMVN NSPNRVFECK TCNRQFSSFQ ALGGHRASHK KPRLMGEMNF  60
HLPISPPKPK THECSICGLE FPIGQALGGH MRRHRGMLNE NNNNNNNNNN NNNNNNNNNN  120
NNNNNNVLKK LKNPRVLCLD LNLTPLENDH LELIKLKKEA PKVDCFL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2056810.0AC205681.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 5 clone C05HBa0025A19, complete sequence.
GenBankHG9755170.0HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886782.11e-115zinc finger protein ZAT11-like
TrEMBLA0A1U8GU692e-80A0A1U8GU69_CAPAN; zinc finger protein ZAT11-like
STRINGSolyc05g054660.1.11e-114(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.19e-33C2H2 family protein