PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g005090.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 199aa    MW: 21710.6 Da    PI: 4.906
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g005090.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260133.58.5e-42451441100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca++Cvlapyfp ++p kf  +h++FGasn++k+l++lpe +r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+
  Sopim06g005090.0.1  45 PCAACKILRRRCAEKCVLAPYFPPNDPIKFTTAHRVFGASNIIKFLQELPEFQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVNELQ 135
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ++la++++e
  Sopim06g005090.0.1 136 VQLAKAQAE 144
                         ****99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.8644145IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-4245142IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MESSSDTTNA TTITSSPPSS RSVSPSSSSP PNSPPSPQVA VVISPCAACK ILRRRCAEKC  60
VLAPYFPPND PIKFTTAHRV FGASNIIKFL QELPEFQRAD AVSSMVYEAN ARLRDPVYGC  120
AGAICQLQKQ VNELQVQLAK AQAEVVNMQC EQANFMTLFC MENMTQSPPQ QSLDNFTQIN  180
MSILDDNNVG SIWETLWT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-434415210118LOB family transfactor Ramosa2.1
5ly0_B2e-434415210118LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240601.11e-145LOB domain-containing protein 1-like
SwissprotQ9LQR05e-70LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A3Q7HI911e-144A0A3Q7HI91_SOLLC; Uncharacterized protein
STRINGSolyc06g005090.2.11e-144(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.14e-71LOB domain-containing protein 1