PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim06g007390.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 239aa MW: 26192.1 Da PI: 8.8567

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim06g007390.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.3	9.9e-42	52	151	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+lrrkCa++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe++r da++slvyeA++r+rdPvyG++g i++l+qq+++l+ Sopim06g007390.0.1 52 PCAACKLLRRKCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKLLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISTLNQQVQSLQ 142 7**************************************************************************************** PP DUF260 92 aelallkee 100 +el+++++e Sopim06g007390.0.1 143 VELNATRAE 151 **99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.577	51	152	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-41	52	149	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MSTKRERLDE IIGKKLKIEN IDASSKLHMQ QIMGRRHIIL EPSCTKLNTI IPCAACKLLR 60 RKCAEECPFS PYFSPHEPQK FAAVHKVFGA SNVSKLLMEV PESQRADAAN SLVYEANVRL 120 RDPVYGCMGA ISTLNQQVQS LQVELNATRA EILRYKYREV TNNLIIASTG IGATVAVAEL 180 PQAPSTPTHP PRPPPPQESF GLVVPSCSSP PSTQSVYATP SSRANFSVIS NNNVPYFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-45	52	162	11	121	LOB family transfactor Ramosa2.1
5ly0_B	2e-45	52	162	11	121	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004240624.1	1e-176	LOB domain-containing protein 15-like
Swissprot	Q9AT61	4e-70	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A3Q7GRX2	1e-175	A0A3Q7GRX2_SOLLC; Uncharacterized protein
STRING	Solyc06g007390.2.1	1e-176	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	5e-73	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]