PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g033830.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 114aa    MW: 13005.8 Da    PI: 7.4114
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g033830.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.27.8e-17958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        k+ie+   r+  +skR+ g+ KK +EL v C +++a+++fs+tg++ +ys
  Sopim06g033830.0.1  9 KKIEDPESRKHFYSKRKDGLVKKSNELGVVCHTNIALLMFSPTGEVTTYS 58
                        689999999****************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.834161IPR002100Transcription factor, MADS-box
CDDcd001209.31E-17258No hitNo description
PRINTSPR004043.0E-12323IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.05E-18477IPR002100Transcription factor, MADS-box
PfamPF003199.0E-181057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-122338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-123859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 114 aa     Download sequence    Send to blast
MGCNKVVMKK IEDPESRKHF YSKRKDGLVK KSNELGVVCH TNIALLMFSP TGEVTTYSRA  60
KSSYEPQVEN INNVEEADAY KGYLLGAMER VQRSKEPLGD ERFDELNWIT MER*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755183e-96HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010322056.12e-51MADS-box protein defh21-like
TrEMBLK4C4K71e-77K4C4K7_SOLLC; Uncharacterized protein
STRINGSolyc06g033830.1.12e-78(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2824522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.18e-14AGAMOUS-like 21