PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g034030.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 329aa    MW: 36089.9 Da    PI: 10.625
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g034030.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.32.4e-10103147347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE+  ++ + + lG+g+W+ I+++    Rt+ q+ s+ qky
  Sopim06g034030.0.1 103 SWTEEEHRYFLIGLENLGKGDWRGISKRYVPSRTPTQVASHSQKY 147
                         7*************************99999************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565621IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129415.86796152IPR017930Myb domain
SuperFamilySSF466892.11E-1697152IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-1499150IPR006447Myb domain, plants
SMARTSM007171.4E-6100150IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-10100143IPR009057Homeodomain-like
CDDcd001674.96E-7103143No hitNo description
PfamPF002492.8E-8103147IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MAKDARKCSH CGHNGHNSRT CNSKGIKLFG VRIDDSNNTN QHRFVDTKMK MGDYESIRRS  60
KSLGNLEHAA AAAANYDHNG GVEAGYLSDG PIISIRHRKK GTSWTEEEHR YFLIGLENLG  120
KGDWRGISKR YVPSRTPTQV ASHSQKYFIR IASIEKKKRR PSVFDVHLKN PNSHIPSKSS  180
SYIPEVSKET SFPLKQLFDT CQIKGQASKG IPSATRERPP LSPSPISRPF GVPNLAHMPY  240
VGVPQNIQGV SSSKVGPTIS WIPIVNFHNE SRVHLKNSSQ GPLPFAPFVA RPTIGVLPSQ  300
PPSQVQSQPG HSTPITNKDG VNIIIGAL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KKKRR
2155160KKKRRP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-168HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240766.30.0probable transcription factor At5g61620 isoform X2
TrEMBLA0A3Q7GTK60.0A0A3Q7GTK6_SOLLC; Uncharacterized protein
STRINGSolyc06g034030.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA117831823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-48MYB_related family protein