PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g048380.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20066.7 Da    PI: 4.9038
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g048380.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF39.85.7e-13955147
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                        k ie+ + rq  +sk +  i KK +EL  LCd+++a++++s++g++ 
  Sopim06g048380.0.1  9 KIIEDPISRQQFYSKCKDSIVKKSNELGLLCDTNIALLMVSPNGEVT 55
                        5699****************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-13160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.871161IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-11323IPR002100Transcription factor, MADS-box
CDDcd001201.33E-13354No hitNo description
SuperFamilySSF554551.12E-16373IPR002100Transcription factor, MADS-box
PfamPF003191.8E-131155IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MDRNKIMIKI IEDPISRQQF YSKCKDSIVK KSNELGLLCD TNIALLMVSP NGEVTSCSGG  60
ESFEDIMSNA MNQFDELNRH SYEPQVENIN TVEEADAYEQ YLLGAIGRIQ LSKAKFLDNQ  120
EFLKRNENVA EPVRDGRPER NILDHNGCSC SRNYVILVYI LKLSTMNNLH QASKQD*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755182e-98HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078433.11e-78agamous-like MADS-box protein AGL66
TrEMBLA0A3Q7GS712e-70A0A3Q7GS71_SOLLC; Uncharacterized protein
STRINGSolyc06g048380.1.11e-128(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.13e-13AGAMOUS-like 66