PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim06g050950.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 172aa MW: 19129.8 Da PI: 5.1713

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim06g050950.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.4	2.6e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +Ca+Ck+lrr+CakdC+++pyfp ++p+kfa+vhk+FGasn++k+l+++p +er da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ Sopim06g050950.0.1 7 PCASCKLLRRRCAKDCIFSPYFPCDDPHKFAIVHKVFGASNISKMLQEVPVNERADAVSSLVYEANARMRDPVYGCVGAISYLQNQVMQLQ 97 7**************************************************************************************** PP DUF260 92 aelallkee 100 +la++++e Sopim06g050950.0.1 98 MQLAMAQAE 106 **99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.379	6	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.1E-43	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MGAGNSPCAS CKLLRRRCAK DCIFSPYFPC DDPHKFAIVH KVFGASNISK MLQEVPVNER 60 ADAVSSLVYE ANARMRDPVY GCVGAISYLQ NQVMQLQMQL AMAQAEILCI QMQSETPQVE 120 AATVLPITPD NQLVENDHDI DKSFFLSDQY LNFDSTSHKS CNSQDGLFLW R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-45	2	108	7	112	LOB family transfactor Ramosa2.1
5ly0_B	2e-45	2	108	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010322163.1	1e-127	LOB domain-containing protein 12-like
Swissprot	Q8LBW3	7e-71	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A3Q7GVM8	1e-125	A0A3Q7GVM8_SOLLC; Uncharacterized protein
STRING	Solyc06g050950.2.1	1e-126	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-60	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]