PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g054680.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 181aa    MW: 21152.8 Da    PI: 7.1869
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g054680.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF27.63.6e-091563149
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                        k+ienk     +f+kRr+g+ KK + L +  ++++ ++++s tgk + +
  Sopim06g054680.0.1 15 KKIENKDSMFASFTKRREGLYKKSSKLATEYNVDIGIMMISATGKPHSF 63
                        68******************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.7E-11766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.563767IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-18879IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-8929IPR002100Transcription factor, MADS-box
PfamPF003195.5E-141663IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004044.7E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MERKKTKGRQ KIPMKKIENK DSMFASFTKR REGLYKKSSK LATEYNVDIG IMMISATGKP  60
HSFFHPTFDA VISRFQNHDM QFGERTNLEA NDARNEVNQL KTRLEELDVR EDIAIAKKNS  120
YEQMEETRQK GWWESTEQLN ADEVFIFETW LNETSSNLHH RLNQLEIEAS SSMRHESFGV  180
*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241160.21e-132agamous-like MADS-box protein AGL29
TrEMBLA0A3Q7GUD71e-131A0A3Q7GUD7_SOLLC; Uncharacterized protein
STRINGSolyc06g054680.1.11e-132(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-20AGAMOUS-like 62