PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g062630.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 140aa    MW: 16132.1 Da    PI: 10.2398
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g062630.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26088.87.1e-2868133166
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAe 66 
                         aCaaCk++rrkCa+dCvlapyfp++++++f n+hklFG+sn++k++++l++  +++am++++++++
  Sopim06g062630.0.1  68 ACAACKYQRRKCAPDCVLAPYFPHDRQRQFLNAHKLFGVSNITKIIRHLDQPFKDEAMRTIIFQSD 133
                         7**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.85367139IPR004883Lateral organ boundaries, LOB
PfamPF031958.3E-2668133IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MQNQMTSFTN PNNNNNNNNI HIQQTPHTFI TDHNNLNHNN NKYTKRVHNN NNINDKNVLL  60
RVSGAGQACA ACKYQRRKCA PDCVLAPYFP HDRQRQFLNA HKLFGVSNIT KIIRHLDQPF  120
KDEAMRTIIF QSDRPATSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-1964133776LOB family transfactor Ramosa2.1
5ly0_B1e-1964133776LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242267.27e-93LOB domain-containing protein 22
TrEMBLM1A1B22e-73M1A1B2_SOLTU; Uncharacterized protein
STRINGSolyc06g062630.2.11e-98(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99262126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.14e-37LOB domain-containing protein 22