PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g064540.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 149aa    MW: 16955.5 Da    PI: 8.5937
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g064540.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.65e-39131131101
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk lrr+C++dC++ pyfp ++p++f +vh+++Gasnv kll++++e++r d+++sl+yeA +r++ PvyG+vg+i+ l+q++++l+
  Sopim06g064540.0.1  13 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSFVHRIYGASNVGKLLQQVQEHQRADVADSLYYEAYCRIKSPVYGCVGIITILHQEIDRLE 103
                         6****************************************************************************************** PP

              DUF260  92 aelallkeel 101
                          el+++++e+
  Sopim06g064540.0.1 104 RELVKVQAEI 113
                         *****99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.40612113IPR004883Lateral organ boundaries, LOB
PfamPF031951.8E-3813110IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016020Cellular Componentmembrane
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MVDLQNVLMN SRRCAACKQL RRRCPSDCIF LPYFPPNNPQ RFSFVHRIYG ASNVGKLLQQ  60
VQEHQRADVA DSLYYEAYCR IKSPVYGCVG IITILHQEID RLERELVKVQ AEISLVKGQT  120
QIEGQLAQGQ QVQLSSSSFH LPTTTPWF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-371411312111LOB family transfactor Ramosa2.1
5ly0_B4e-371411312111LOB family transfactor Ramosa2.1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00381DAPTransfer from AT3G26620Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755181e-151HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773287.17e-99LOB domain-containing protein 24-like
SwissprotP594677e-47LBD23_ARATH; LOB domain-containing protein 23
SwissprotP594685e-47LBD24_ARATH; LOB domain-containing protein 24
TrEMBLA0A3Q7HRS91e-100A0A3Q7HRS9_SOLLC; Uncharacterized protein
STRINGSolyc06g064540.1.11e-107(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52772039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.12e-49LOB domain-containing protein 24