PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim06g066180.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

G2-like

Protein Properties

Length: 184aa MW: 20394.3 Da PI: 10.4324

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim06g066180.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.7	1.1e-32	18	72	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH++Fv+av++LGG++kAtPk +l+lm++kgLtl+h+kSHLQkYRl Sopim06g066180.0.1 18 KPRLRWTAELHQQFVDAVTKLGGPDKATPKLVLRLMGLKGLTLYHLKSHLQKYRL 72 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-31	15	72	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.953	15	75	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.6E-23	18	73	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.4E-16	18	73	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-9	20	71	IPR001005	SANT/Myb domain
Pfam	PF14379	3.5E-11	118	151	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MGSNLYENDG VVMTRDPKPR LRWTAELHQQ FVDAVTKLGG PDKATPKLVL RLMGLKGLTL 60 YHLKSHLQKY RLGQLAKKQN AAEANKENSG DSSGQFGLHS SGPSTSSLSM NFMQGEVPTT 120 EAVMSQIQVQ KILQEQLQVQ QKLQMRIEAQ GSNNLSSPCF RFTSVKFNGL WREPGLQHRA 180 TNV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-19	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-19	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-19	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-19	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	8e-64	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	8e-64	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010322712.1	1e-107	myb family transcription factor PHL11
Swissprot	C0SVS4	3e-57	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A3Q7GZC3	8e-94	A0A3Q7GZC3_SOLLC; Uncharacterized protein
STRING	Solyc06g066180.2.1	1e-134	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4416	21	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	2e-35	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]