PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g068390.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 178aa    MW: 20275.8 Da    PI: 8.936
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g068390.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.000345678123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C + F ++  L  H++ H
  Sopim06g068390.0.1 56 FSCNYCYRNFYSSQALGGHQNAH 78
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.93E-65284No hitNo description
PROSITE profilePS5015711.1985683IPR007087Zinc finger, C2H2
PROSITE patternPS0002805878IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDSQNQSAQD DKQENNGLIL DLDLSLLCNW ELKPTDDQII KTTNHTCDGE TEHQVFSCNY  60
CYRNFYSSQA LGGHQNAHKR ERTTMAKRKH SMDSIPIMHR PPPAIQAHSM THKPNISSNT  120
FRAPAIPTSL YNTHSAPMWS KRRRDQFPVI GRPERNKFST VVGSQEDLKK LDLSLKL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004241683.11e-133zinc finger protein 3
TrEMBLA0A3Q7GWW51e-132A0A3Q7GWW5_SOLLC; Uncharacterized protein
STRINGSolyc06g068390.1.11e-132(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1593066
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.14e-20C2H2 family protein