PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g069460.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 279aa    MW: 30895.1 Da    PI: 9.4107
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g069460.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.97.8e-3057131374
                 TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...e 74 
                         g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+ + k +i++l+ ++ +++s +   +
  Sopim06g069460.0.1  57 GGKDRHSKVCTVKGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATKDEIDKLPPLQIPPPSLShffS 131
                         79*************************************************************777763222221 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-2658123IPR005333Transcription factor, TCP
PROSITE profilePS5136929.4458116IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MNSRKQETGS GVDTNNSKTT STTTATTIPS SSSSRQSSSW GGGFKNPRIV RVSRSFGGKD  60
RHSKVCTVKG LRDRRIRLSV PTAIQLYDLQ DRLGLSQPSK VVDWLIDATK DEIDKLPPLQ  120
IPPPSLSHFF STKDHHNLDF VDTGLFGKDR WIATTNDQES SNHLIFQSSN LGMLNTFSNS  180
WEPNSNLSLG PFGNYQDQYQ QQQNMPLIPS SSHHQQQQLY FCPTSSSTTT LSSLVPPYNS  240
HFHPNSIAPT LQLTTSPVKS SFSLQDHHQH NHKEGSGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-1963117155Putative transcription factor PCF6
5zkt_B2e-1963117155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4963240.0GQ496324.1 Solanum lycopersicum TCP transcription factor 6 (TCP6) mRNA, complete cds.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234568.10.0TCP transcription factor 6
TrEMBLG3BGU60.0G3BGU6_SOLLC; TCP transcription factor 6
STRINGSolyc06g069460.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-42TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5