PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g072370.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family BBR-BPC
Protein Properties Length: 287aa    MW: 32063.7 Da    PI: 10.1826
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g072370.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind289.71.2e-8842869301
           GAGA_bind   9 rnkgyyepa.aslkenlglqlmssiaerdakirernlalsekkaavaerd...maflqrdkalaernkalverdnkllalllvenslasal 95 
                         rn++y+ep+ +  k +lglq +ss++e+    r+ + + +++++++++     ma ++   a+++  + +    +  + ++++++s ++++
  Sopim06g072370.0.1   4 RNWSYFEPTpTVPKGHLGLQFVSSMNEKPPHFRNIHDNHQQQQQSHQPDHpsvMASTN-GGAFHH--HRVCGLSESPMPMEYMRDSWVNQK 91 
                         9*******9677799***********99988866666555555554443333377744.445555..577777888999999999999999 PP

           GAGA_bind  96 pvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader 186
                             + l+  +s++++qq   p+l +  +         ++++ ++ +++   +kk+   ++++ k++k kk+kk ++++k++++++  ++r
  Sopim06g072370.0.1  92 DYREKYLNVLSSMQMHQQ---PNLVKVETA------PLVEEVCQEGDNIGGLAKKRGAGQSQELKSPKPKKAKKATRAPKDESTSS--PPR 171
                         888888888888887777...433332222......23344444455555555555555566677777777777666665555444..489 PP

           GAGA_bind 187 skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGy 277
                         ++a++ks ++v+ng+++D+s +P+P+CsCtGa +qCY+WG+GGWqSaCCtt++S yPLP++ krrg+RiagrKmS gafkk+LekLa+eGy
  Sopim06g072370.0.1 172 ARAPRKSAEVVINGINMDISVIPIPICSCTGAAQQCYRWGCGGWQSACCTTNLSSYPLPMNVKRRGSRIAGRKMSLGAFKKVLEKLASEGY 262
                         ******************************************************************************************* PP

           GAGA_bind 278 dlsnpvDLkdhWAkHGtnkfvtir 301
                         ++snp+DLk hWA+HGtnkfv ir
  Sopim06g072370.0.1 263 NFSNPIDLKPHWARHGTNKFVIIR 286
                         **********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.2E-1241286IPR010409GAGA-binding transcriptional activator
PfamPF062173.9E-942286IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MHIRNWSYFE PTPTVPKGHL GLQFVSSMNE KPPHFRNIHD NHQQQQQSHQ PDHPSVMAST  60
NGGAFHHHRV CGLSESPMPM EYMRDSWVNQ KDYREKYLNV LSSMQMHQQP NLVKVETAPL  120
VEEVCQEGDN IGGLAKKRGA GQSQELKSPK PKKAKKATRA PKDESTSSPP RARAPRKSAE  180
VVINGINMDI SVIPIPICSC TGAAQQCYRW GCGGWQSACC TTNLSSYPLP MNVKRRGSRI  240
AGRKMSLGAF KKVLEKLASE GYNFSNPIDL KPHWARHGTN KFVIIR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823100.0FJ982310.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC5) mRNA, complete cds.
GenBankFJ9823110.0FJ982311.1 Solanum lycopersicum GAGA-binding transcriptional activator (BBR/BPC5) gene, complete cds.
GenBankHG9755180.0HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001266122.10.0GAGA-binding transcriptional activator isoform 1
RefseqXP_010322309.10.0GAGA-binding transcriptional activator isoform X1
RefseqXP_010322311.10.0GAGA-binding transcriptional activator isoform X1
RefseqXP_025887075.10.0GAGA-binding transcriptional activator isoform X1
TrEMBLA0A3Q7HUZ50.0A0A3Q7HUZ5_SOLLC; Uncharacterized protein
STRINGSolyc06g072370.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA100482026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.36e-73basic pentacysteine 2