PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim06g073210.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 233aa MW: 26320.4 Da PI: 8.6669

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim06g073210.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	61.4	2.7e-19	50	135	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+eYA ++GF +r+ +s+ks+r+g+i++r + C +++ + +++r r gC+a++ vk+ek g+w+v k++ +HnH+l+ Sopim06g073210.0.1 50 YYDEYAGMTGFITRVLSSRKSERDGSIISRGLGCRGIPDNQRPVSL---VNQKRDRRRDGCTAMILVKREKPGTWVVRKFVRDHNHPLV 135 8*******************************876666666555...778888999***************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-17	50	135	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence Send to blast
MTMDVHNLED NGAGRVESSA EGQVSTSEAD RTQEPNEGMT FESEEAARAY YDEYAGMTGF 60 ITRVLSSRKS ERDGSIISRG LGCRGIPDNQ RPVSLVNQKR DRRRDGCTAM ILVKREKPGT 120 WVVRKFVRDH NHPLVIPPSK RRPTSDEKDK RIQELTAELR TKKRLTAAYR EQLLSLMKDV 180 ESHSEHLSAK VQAVQSILKE LEAKRQELSN HSGHHKNSRV YTPVESDYDG TD*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004241417.1	1e-160	protein FAR1-RELATED SEQUENCE 2-like
TrEMBL	A0A3Q7HVF2	1e-154	A0A3Q7HVF2_SOLLC; Uncharacterized protein
STRING	Solyc06g073210.2.1	1e-173	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13099	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-47	FAR1 family protein