PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim06g073920.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

YABBY

Protein Properties

Length: 193aa MW: 21347.1 Da PI: 8.6049

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim06g073920.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	232	1.4e-71	9	165	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 ssse+vCyv+CnfC+tilavsvP +s++++vtvrCGhC++llsvn+a + q l+ ++ l+++ + ++ + + + + ++++s+++ Sopim06g073920.0.1 9 SSSSERVCYVHCNFCSTILAVSVPCNSMMTIVTVRCGHCANLLSVNIAPSLQSLPIQD-LQRQNESSIEDGM------SRGYGSSSSSTNS 92 5799**************************************************99.5554444443333......2333444444444 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + +++ d++ pr pp ir PekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Sopim06g073920.0.1 93 FHRFSPIPT--DHDQPRSPP-IRVPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 165 455555555..556688888.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.1E-73	11	165	IPR006780	YABBY protein
SuperFamily	SSF47095	1.83E-8	104	158	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.2E-5	112	159	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MSLDMTYSSS SSERVCYVHC NFCSTILAVS VPCNSMMTIV TVRCGHCANL LSVNIAPSLQ 60 SLPIQDLQRQ NESSIEDGMS RGYGSSSSST NSFHRFSPIP TDHDQPRSPP IRVPEKRQRV 120 PSAYNRFIKE EIQRIKASNP DISHREAFST AAKNWAHFPH IHFGLKLDGN KQTNKLDHAV 180 AGEGPQKTIG LY*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667767	0.0	KJ667767.1 Solanum virginianum YAB2 protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001353825.1	1e-143	putative axial regulator YABBY 2a
Swissprot	Q9XFB0	4e-77	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A3Q7GZK7	1e-142	A0A3Q7GZK7_SOLLC; Uncharacterized protein
STRING	Solyc06g073920.2.1	1e-143	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-74	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]