PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim06g076290.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 126aa    MW: 14029.3 Da    PI: 10.0068
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim06g076290.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS28.91.4e-0986167120
                GRAS  67 setseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdis 120
                          ++++ + ++ l+a+++++ +sP   +s+++aN+ I   + +++ +HiiDf+i 
  Sopim06g076290.0.1   8 FAKRRISAADILKAFQVYVTASPSRMMSNIIANKSIGMLTREATSIHIIDFGIL 61 
                         44445558999*****************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS509858.7231125IPR005202Transcription factor GRAS
PfamPF035144.7E-7861IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 126 aa     Download sequence    Send to blast
MESLIRSFAK RRISAADILK AFQVYVTASP SRMMSNIIAN KSIGMLTREA TSIHIIDFGI  60
LITGIDFPQA GFRPAERVEE TGRRLVYENS PRDDVLRLIK QIKPDVFLHG IVNGAYNSNF  120
LCNSI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755183e-62HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016576235.14e-44PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 14
SwissprotQ9SNB82e-24SCL30_ARATH; Scarecrow-like protein 30
TrEMBLA0A2G2WND41e-44A0A2G2WND4_CAPBA; Scarecrow-like protein 11
TrEMBLA0A2G3CBK24e-45A0A2G3CBK2_CAPCH; Scarecrow-like protein 30
STRINGSolyc06g076290.1.16e-86(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2843222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46600.26e-27GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]