PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim06g082770.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 188aa MW: 21219.1 Da PI: 7.2648

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim06g082770.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.3	1.1e-37	13	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C+aCk+lrr+C+kdC++ pyfp ++p+kf +vh++FGasn++k+l++ p ++reda+ s+vyeA ar+rdPvyG+vg+i++lq+++ +l Sopim06g082770.0.1 13 PCSACKLLRRRCTKDCIFLPYFPPTEPHKFVVVHRIFGASNITKMLQQEiPMDNREDAVISMVYEATARLRDPVYGSVGIISALQKHIFHL 103 7*******************************************97637778********************************* PP DUF260 91 kaelallkee 100 ++el+++ +e Sopim06g082770.0.1 104 QSELNEASAE 113 **998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.17	12	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-38	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MNSRLSKKNK HMPCSACKLL RRRCTKDCIF LPYFPPTEPH KFVVVHRIFG ASNITKMLQQ 60 EIPMDNREDA VISMVYEATA RLRDPVYGSV GIISALQKHI FHLQSELNEA SAEAMSLRTQ 120 LSDASTSSLP SSLMQVSPFT PENHEFHHSQ NSSQQNAYSN NDLQLIPPEA ADYCFQQTDQ 180 VLHPLPY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-40	13	137	11	130	LOB family transfactor Ramosa2.1
5ly0_B	6e-40	13	137	11	130	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975518	0.0	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019070085.1	1e-139	LOB domain-containing protein 24-like isoform X1
Swissprot	Q8LBW3	1e-44	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A3Q7H1C1	1e-137	A0A3Q7H1C1_SOLLC; Uncharacterized protein
STRING	Solyc06g082770.2.1	1e-138	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13147	14	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-46	LBD family protein

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715]