PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g006840.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 484aa    MW: 55483.4 Da    PI: 4.7773
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g006840.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM132.92.2e-41561842128
                 NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                         ppGfrFhPtd el+++yL++k+++ +l+  + i e++iyk+eP ++ +  k +++e+ wy F++rd+ky++g+r+ r t +gyWkatg dk
  Sopim07g006840.0.1  56 PPGFRFHPTDYELIKHYLERKLANLPLHP-NKIYELNIYKYEPDTIAAqlKPTTTENIWYVFTPRDRKYPNGERPDRCTWNGYWKATGIDK 145
                         9*************************999.77**************8523445577799******************************** PP

                 NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++  + +++g ++ Lv+y g+ p+g+ktdW+mhey +
  Sopim07g006840.0.1 146 IIVDDdNISKIGSRRALVYYIGKPPNGKKTDWIMHEYMI 184
                         ***9856677***************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0001803648IPR018247EF-Hand 1, calcium-binding site
SuperFamilySSF1019419.02E-4848210IPR003441NAC domain
PROSITE profilePS5100548.63855211IPR003441NAC domain
PfamPF023651.1E-2256183IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MENHNTSLTN NESKDNLISA NHINELPISA VFSNKDSNGD QIMSPEDVEA LMNKFPPGFR  60
FHPTDYELIK HYLERKLANL PLHPNKIYEL NIYKYEPDTI AAQLKPTTTE NIWYVFTPRD  120
RKYPNGERPD RCTWNGYWKA TGIDKIIVDD DNISKIGSRR ALVYYIGKPP NGKKTDWIMH  180
EYMIPKITIP NSSTPRNPKL DEWVLCKFYN RNDVITSGST RRKRKRGDHD PIIDEVHQDS  240
VRNSFTNFNN NDNHAVMLSE GTSLGNDPTS YFNYNYNHAT MFFQGTDQDS MRKDHTNYDN  300
NYNHAMTLHP QVHMEVPTLP QCPNMPFLSN YQNYVSDHFN DYSIVDPPLP LRIEPTPTNN  360
SIEHDYTMNN VGVGGDYGEY SEVHDQYYVS DQYIVDNYES QYDTNNFVNG ETTTSNNFVN  420
GETTTSNNFV NGETTTTSNN FVNGETTNSN NFANGETTNS DNYETNTSNN FVNGETSTSK  480
EDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-455521217166NO APICAL MERISTEM PROTEIN
1ut4_B4e-455521217166NO APICAL MERISTEM PROTEIN
1ut7_A4e-455521217166NO APICAL MERISTEM PROTEIN
1ut7_B4e-455521217166NO APICAL MERISTEM PROTEIN
3swm_A6e-455521220169NAC domain-containing protein 19
3swm_B6e-455521220169NAC domain-containing protein 19
3swm_C6e-455521220169NAC domain-containing protein 19
3swm_D6e-455521220169NAC domain-containing protein 19
3swp_A6e-455521220169NAC domain-containing protein 19
3swp_B6e-455521220169NAC domain-containing protein 19
3swp_C6e-455521220169NAC domain-containing protein 19
3swp_D6e-455521220169NAC domain-containing protein 19
4dul_A4e-455521217166NAC domain-containing protein 19
4dul_B4e-455521217166NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220225RRKRKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0877730.0AC087773.1 Genomic Sequence For Lycopersicon esculentum Clone T62O11, complete sequence.
GenBankAF4118080.0AF411808.1 Lycopersicon esculentum BAC clone Clemson_Id 62O11, complete sequence.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010323471.10.0protein CUP-SHAPED COTYLEDON 3-like
TrEMBLK4CBF50.0K4CBF5_SOLLC; Uncharacterized protein
STRINGSolyc07g006840.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139361213
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.14e-49NAC domain containing protein 25