PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g017470.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 97aa    MW: 10704.1 Da    PI: 4.4693
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g017470.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.31.3e-1315734098
                        ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
                  B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98
                        +  g++W++ +   + + +y +++GWk+F+++n+LkegD +vF+l+  + ++ e++++++r
  Sopim07g017470.0.1 15 SYGGKKWNLIY--GGAKTKYKFSTGWKNFADDNNLKEGDGLVFELSeCNsDKIEFKIQILR 73
                        5679*******..9******************************98655566677777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.747175IPR003340B3 DNA binding domain
CDDcd100171.81E-141373No hitNo description
SuperFamilySSF1019362.16E-131373IPR015300DNA-binding pseudobarrel domain
PfamPF023624.8E-111471IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-121674IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MSKELPFAGA PAVLSYGGKK WNLIYGGAKT KYKFSTGWKN FADDNNLKEG DGLVFELSEC  60
NSDKIEFKIQ ILREDFPAEL VPDVEGMNTN NPIIID*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755191e-159HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019070339.13e-64B3 domain-containing protein Os04g0386900-like
TrEMBLA0A3Q7H5F21e-62A0A3Q7H5F2_SOLLC; Uncharacterized protein
STRINGSolyc07g017470.1.12e-63(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-08B3 family protein