PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g019550.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARR-B
Protein Properties Length: 368aa    MW: 42002.9 Da    PI: 7.0031
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g019550.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like71.11.6e-22190243155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+r++Wt  LH++Fv++v++L G ++A P++il+ m+ + Lt+ hv+SHLQkYR+
  Sopim07g019550.0.1 190 KTRIVWTDPLHNKFVDVVSKL-GMKEAHPRKILDRMDTPELTRIHVASHLQKYRM 243
                         68*******************.9*******************************7 PP
2Response_reg52.52.8e-18151212108
                         EEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
        Response_reg   2 livdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                         l+vd +++ + + +++l+k+++ ev +++++++al  l+ +   ++l+++ + mp+++G++l +ei+++  ++p+ + +  ++e+++++ l
  Sopim07g019550.0.1  15 LLVDVDDSCLLITATFLKKSKF-EVVTVKSAKDALGVLRSSGlsFELVVTEVHMPEINGFQLQQEIAKKF-NIPVAFYSVDEKESTIIKGL 103
                         789999999*************.***************999888**********************9999.9******************* PP

                         HTTESEEEESS--HHHHH CS
        Response_reg  91 kaGakdflsKpfdpeelv 108
                         + G+  f  Kp+++++++
  Sopim07g019550.0.1 104 ESGVILFMGKPISQNDII 121
                         *************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23006.4E-2312160No hitNo description
SMARTSM004481.2E-1212124IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011026.51513128IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521725.55E-2013143IPR011006CheY-like superfamily
PfamPF000721.3E-1415121IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.67E-1615121No hitNo description
SuperFamilySSF466896.81E-16188247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.9E-23188247IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-20190243IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MEEQNNQFFE IIRCLLVDVD DSCLLITATF LKKSKFEVVT VKSAKDALGV LRSSGLSFEL  60
VVTEVHMPEI NGFQLQQEIA KKFNIPVAFY SVDEKESTII KGLESGVILF MGKPISQNDI  120
IFLWKYAAMR KKIYKGKQVI NQQNQDDTNE RIPHEVIHIE SSSPDSERDK SARKSEENKS  180
EHSSSPPSKK TRIVWTDPLH NKFVDVVSKL GMKEAHPRKI LDRMDTPELT RIHVASHLQK  240
YRMDLKKDSR VQQLMPENSN VVDHVIETDH QDFHSCQREK ELARILCRHI NKMSHNIGLG  300
EASIELSTLQ QSYEITGNGG TGTTTDDFVM LDNVYSTELT SIISGSQLNV QSSNMVRFFK  360
FFRLFSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-14189249464ARR10-B
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243095.10.0two-component response regulator ARR14-like
TrEMBLK4CCR70.0K4CCR7_SOLLC; Uncharacterized protein
STRINGSolyc07g019550.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.13e-33response regulator 14