PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim07g021550.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HRT-like

Protein Properties

Length: 457aa MW: 51095.8 Da PI: 10.0685

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim07g021550.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	49.7	5.9e-16	272	302	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++GsvC r+P g+KRC+eHKGm++ Sopim07g021550.0.1 272 ICGVALGHGSVCIRPPKTGNKRCAEHKGMKV 302 8****************************97 PP
2	HRT-like	42.6	9.9e-14	330	359	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 iCG+il+ G C r P + +KRC eHKG+R Sopim07g021550.0.1 330 ICGFILDSGASCARIPFQRNKRCMEHKGRR 359 8****************************9 PP
3	HRT-like	48.6	1.4e-15	419	449	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l+dGs+C+ qP gRKRCe HK mR+ Sopim07g021550.0.1 419 ICGVHLNDGSFCTSQPTVGRKRCEGHKCMRV 449 8*****************************7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MGAADKSFTR RLRREDCKRT KHDSSFSHWK ILVGPNDWED YLLGKEGTER YRTQNLPNCT 60 SCSGVYELGI AVSRRKAGRE ATRLDPDYIV PVYVGKSNNV RTRLQQYGRV GAHLENDYSN 120 SELHVGEIIS GPKRAGLFTE TFSRGFSIVY RWAPMNDNKD AERTEAQLLD KFDYAWNKGS 180 NGVRRHNDVL RKLDGISRKT HLPAFIRKLQ LSLEKQKGVR IKACEPLLLE NGSGFHDSFK 240 STNFLPQILK FGRSQPRIVS VNVGVNGDPN IICGVALGHG SVCIRPPKTG NKRCAEHKGM 300 KVNSVKSKLI AEGNGSTRPC VSIDEENSPI CGFILDSGAS CARIPFQRNK RCMEHKGRRN 360 RGSNSQPTTY KIGQWTHNPI LENRTSSSND CQHILSSKAG RQDSQDFSSS LIHQNYNVIC 420 GVHLNDGSFC TSQPTVGRKR CEGHKCMRVK EPISSN*

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MGAADKSFTR RLRREDCKRT KHDSSFSHWK ILVGPNDWED YLLGKEGTER YRTQNLPNCT  60
SCSGVYELGI AVSRRKAGRE ATRLDPDYIV PVYVGKSNNV RTRLQQYGRV GAHLENDYSN  120
SELHVGEIIS GPKRAGLFTE TFSRGFSIVY RWAPMNDNKD AERTEAQLLD KFDYAWNKGS  180
NGVRRHNDVL RKLDGISRKT HLPAFIRKLQ LSLEKQKGVR IKACEPLLLE NGSGFHDSFK  240
STNFLPQILK FGRSQPRIVS VNVGVNGDPN IICGVALGHG SVCIRPPKTG NKRCAEHKGM  300
KVNSVKSKLI AEGNGSTRPC VSIDEENSPI CGFILDSGAS CARIPFQRNK RCMEHKGRRN  360
RGSNSQPTTY KIGQWTHNPI LENRTSSSND CQHILSSKAG RQDSQDFSSS LIHQNYNVIC  420
GVHLNDGSFC TSQPTVGRKR CEGHKCMRVK EPISSN*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975519	0.0	HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004242942.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A3Q7HA30	0.0	A0A3Q7HA30_SOLLC; Uncharacterized protein
STRING	Solyc07g021550.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7741	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-85	effector of transcription2