PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g026570.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-other
Protein Properties Length: 142aa    MW: 16757.9 Da    PI: 7.7745
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g026570.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox482.1e-152474656
                        S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                        ++  e +++Lee+Fe+++ ps+++  +L +k+gL+ +q+  WFqN+R + k
  Sopim07g026570.0.1 24 KYDVEKTQQLEEFFEECQRPSEDQQNQLGRKVGLDSKQIMAWFQNKRSQTK 74
                        577899*****************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-15870IPR009057Homeodomain-like
SuperFamilySSF466896.27E-141275IPR009057Homeodomain-like
PROSITE profilePS5007114.5281676IPR001356Homeobox domain
SMARTSM003891.1E-81680IPR001356Homeobox domain
CDDcd000862.99E-82374No hitNo description
PfamPF000468.2E-132474IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MIDSGKKQVG ESSTTPKRQR HCHKYDVEKT QQLEEFFEEC QRPSEDQQNQ LGRKVGLDSK  60
QIMAWFQNKR SQTKAKDDKL DNYTLRKENE FFRCEIMAMK EKKKNNMCPQ CDGPSIGEEE  120
RMCNLENLKT ESQRMREEVN L*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536681e-108AC253668.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone sle-48p11 map 7, complete sequence.
GenBankHG9755191e-108HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025887726.19e-92homeobox-leucine zipper protein HDG11-like
TrEMBLA0A3Q7HA642e-94A0A3Q7HA64_SOLLC; Uncharacterized protein
STRINGSolyc07g026570.1.13e-99(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1859434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.12e-30homeodomain GLABROUS 11