PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g026680.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 197aa    MW: 21757.7 Da    PI: 10.6412
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g026680.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.31e-14122165447
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         WT+eE+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  Sopim07g026680.0.1 122 WTEEEHRRFLMGLEKLGKGDWRGISRKFVTTRTPTQVASHAQKY 165
                         *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.333114170IPR017930Myb domain
SuperFamilySSF466895.01E-17116170IPR009057Homeodomain-like
TIGRFAMsTIGR015579.2E-18118168IPR006447Myb domain, plants
SMARTSM007172.1E-10118168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-11120165IPR009057Homeodomain-like
CDDcd001673.30E-9122166No hitNo description
PfamPF002496.8E-12122165IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGRKCSRCRN IGHNSRTCST FKLGASANFV GGLRLFGVQL IDISSSSSTS SSSSSSSSSS  60
YDIHLKKSLS LDCMSSPQVS ISPSSSSSLV TLNEKSTTCT NGDYLSDCLL GQPKERRKGV  120
GWTEEEHRRF LMGLEKLGKG DWRGISRKFV TTRTPTQVAS HAQKYFLRHS THLNKKKRRS  180
SLFDMVCRIY ILSTFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174178KKKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004242968.11e-132transcription factor MYBS3-like
TrEMBLM1AKK41e-100M1AKK4_SOLTU; Uncharacterized protein
STRINGSolyc07g026680.2.11e-140(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33852147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-48MYB_related family protein