PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g040920.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 210aa    MW: 23386.4 Da    PI: 9.6311
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g040920.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding409.1e-13556147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                        +++WT eE+e l  +v+++G g Wk I r          R+  ++k++w+++
  Sopim07g040920.0.1  5 KQKWTSEEEEALRAGVAKHGAGKWKNIQRDPEfnhllYSRSNIDLKDKWRNL 56
                        79***********************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.042161IPR017930Myb domain
SuperFamilySSF466893.52E-16258IPR009057Homeodomain-like
SMARTSM007171.5E-8459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-14556IPR009057Homeodomain-like
CDDcd116609.13E-21657No hitNo description
PfamPF139211.2E-8862No hitNo description
SMARTSM005261.2E-14117182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.18E-12117180IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-12119180IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.889119209IPR005818Linker histone H1/H5, domain H15
PfamPF005382.1E-9122180IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGAGKWKN IQRDPEFNHL LYSRSNIDLK DKWRNLNVSA  60
NGQGPRDKSR TPKAKANPDA AAAPLAITYA PLSSTLVPQD ASADTVMEDS SKCALDGKTA  120
SKYNQMIYDA LSSLNEPNGS DTSKLVNFIE QRHEVPQNFR RLLSSRLRRL VQQDKLEKVT  180
LSFLHLSAGL LINNCFCNFF CFQKASPNY*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755191e-118HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580279.11e-109PREDICTED: telomere repeat-binding factor 4 isoform X1
SwissprotQ8W1192e-54SMH4_MAIZE; Single myb histone 4
TrEMBLA0A0V0I2T01e-116A0A0V0I2T0_SOLCH; Putative telomere repeat-binding factor 4-like
STRINGSolyc07g040920.2.11e-155(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.15e-50MYB_related family protein
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]