PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g052700.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 191aa    MW: 21334.2 Da    PI: 7.4119
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g052700.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.18.7e-17252151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k+ie+++ r+  +s+R+  i KK +EL v C+++v +++fs++g+l +yss
  Sopim07g052700.0.1  2 KKIEDSTSRKQFYSNRKDSIVKKSNELAVVCGTDVGLLMFSPSGQLTTYSS 52
                        68***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.1E-11153IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.49E-17167IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.292154IPR002100Transcription factor, MADS-box
PfamPF003191.3E-16350IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-61631IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-63152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MKKIEDSTSR KQFYSNRKDS IVKKSNELAV VCGTDVGLLM FSPSGQLTTY SSKESIEDIM  60
IEAMNKSVNP RPIPNLNEQL LMQSLKQSKS EGQMVGKIAI AEAHEKKLNE LKETLREAQQ  120
KIRYCNPQVE NISSVQEAEA YEQFLRSNME QIQQSKAKLL GVQGLVHRNE YPAVNTEDTA  180
AAGTSSGWMF *
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755197e-86HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004243447.11e-139agamous-like MADS-box protein AGL66
TrEMBLA0A3Q7HBW81e-138A0A3Q7HBW8_SOLLC; Uncharacterized protein
STRINGSolyc07g052700.2.11e-139(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52921836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-19AGAMOUS-like 66