PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim07g062980.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family SBP
Protein Properties Length: 133aa    MW: 15039.3 Da    PI: 9.1368
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim07g062980.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.43.2e-411993276
                        -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
                 SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
                        Cqve Cea+l  ak+yh+rhkvC+vh+kap vl++gl+qrfCqqCs+fhelsefD +k+sCr rL++hn+rrrk+
  Sopim07g062980.0.1 19 CQVETCEANLDGAKKYHKRHKVCQVHAKAPIVLLAGLKQRFCQQCSKFHELSEFDGTKKSCRLRLDGHNKRRRKT 93
                        *************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-311680IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.9831693IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.79E-371795IPR004333Transcription factor, SBP-box
PfamPF031101.1E-321992IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MANNDAGEGV VMQVMKHYCQ VETCEANLDG AKKYHKRHKV CQVHAKAPIV LLAGLKQRFC  60
QQCSKFHELS EFDGTKKSCR LRLDGHNKRR RKTPLPIELE DNQCRLINGE ARPHMDMTLS  120
SRNTIYTADI SG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3119921184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755191e-110HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004244240.12e-96squamosa promoter-binding-like protein 3
SwissprotQ387411e-34SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLA0A3Q7HEP34e-95A0A3Q7HEP3_SOLLC; Uncharacterized protein
STRINGSolyc07g062980.2.17e-96(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74924105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33810.12e-36squamosa promoter binding protein-like 3
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]