PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim08g059770.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 154aa MW: 17444.8 Da PI: 9.6863

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim08g059770.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19	3.7e-06	16	38	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+++F+++ L H+r+H Sopim08g059770.0.1 16 FQCRYCDEVFTSSQGLGGHQRKH 38 89********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.16E-6	15	42	No hit	No description
Pfam	PF13912	6.7E-7	15	40	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	6.8E-4	16	38	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.429	16	43	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	18	38	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MANQGLTMNP AGIWYFQCRY CDEVFTSSQG LGGHQRKHMP QGTWKKGESH EKKFCPSDEI 60 SDLYHRLGKR KSTPTVLPSE GRFYRSRSKR NLVHPRSTFD KPQQATVLEK PASTPTPNPF 120 LIEANYFIHF VKQMGINDDM NVGLATKDDI SIP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	84	89	RSRSKR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A3Q7HP22	1e-113	A0A3Q7HP22_SOLLC; Uncharacterized protein
STRING	Solyc08g059770.1.1	1e-114	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6643	8	21