PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g066190.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 386aa    MW: 45386.2 Da    PI: 8.3531
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g066190.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.51.1e-11179220347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         +WT+eE e+l+++ k++G++ Wk+Ia ++g  + + ++k+ w+ +
  Sopim08g066190.0.1 179 KWTEEECEILLKLQKEHGNN-WKRIADELG--KHRRHVKDTWRRL 220
                         8*****************99.********9..6778999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0073103174IPR001005SANT/Myb domain
PROSITE profilePS5129412.562173225IPR017930Myb domain
SMARTSM007175.5E-7176223IPR001005SANT/Myb domain
SuperFamilySSF466894.31E-11177234IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-10179231IPR009057Homeodomain-like
CDDcd001673.58E-6179221No hitNo description
PfamPF139211.7E-13180238No hitNo description
PROSITE profilePS500908.304222290IPR017877Myb-like domain
SMARTSM007170.005226292IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-8232294IPR009057Homeodomain-like
SuperFamilySSF466893.91E-6270345IPR009057Homeodomain-like
PROSITE profilePS500907.143292345IPR017877Myb-like domain
SMARTSM0071754296347IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MERYVSKSRN DGNKSRKLKK MYDTEDIHED VDLSSSIEIE EKNKTDKGNI KKTKSVKLGR  60
SSEDPTHEKS GKRVRFSGQV QIFPSLNHTS DEKHEIEEEN LLQGKRFSKL EDEIVKEAVH  120
KYIELHNLGE EGLKKVLNAR SYPEIKGCWK EIGRSIPYRP TIAVYSRAQI LFRRSESRKW  180
TEEECEILLK LQKEHGNNWK RIADELGKHR RHVKDTWRRL KQSNQNKGSW TQEEYQNLFD  240
LVNTDLRLKL SEEKKSKHGM LRDNIAWNAI SENLSTRNPT NCCLKWYNQL TSSMVDKGEW  300
ADVDDYRLID ALFELDASCI EDVDWDNLLD HRHGEICRKR WNQMILHIGQ LGNKSFVDQV  360
EVLAKRYRPD LVEVREAWDN KPIVP*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092700.0AP009270.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0069E09, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010325066.10.0cyclin-D-binding Myb-like transcription factor 1
TrEMBLA0A3Q7HNG30.0A0A3Q7HNG3_SOLLC; Uncharacterized protein
STRINGSolyc08g066190.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-127MYB_related family protein