PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim08g068760.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

GRF

Protein Properties

Length: 156aa MW: 17395.8 Da PI: 8.7185

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim08g068760.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	59.1	7.2e-19	106	139	2	35
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrg 35 epgrC+RtDGK WRCsr+v + kk CE+H+hrg Sopim08g068760.0.1 106 LEPGRCKRTDGKNWRCSRDVAPHKKSCEHHMHRG 139 69*******************************8 PP
2	QLQ	48	3.9e-17	47	81	2	36
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT+aQ+ +L +Q+++yKy+++ + vPp+Ll+ i+ Sopim08g068760.0.1 47 PFTWAQWKELDRQAMIYKYMVSAMSVPPDLLLSIF 81 9********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	2.2E-9	46	82	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.1E-11	47	81	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.035	47	82	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	19.026	105	151	IPR014977	WRC domain
Pfam	PF08879	3.1E-15	107	139	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MENSKNCYTI CSTDEANLLP LPPSTAVVRS FDVATNSQGM ATALGYPFTW AQWKELDRQA 60 MIYKYMVSAM SVPPDLLLSI FSGASHTTSA TGSVQGQRYT TNIRDLEPGR CKRTDGKNWR 120 CSRDVAPHKK SCEHHMHRGL SILKDGNLIQ VYIYF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010940	0.0	AP010940.1 Solanum lycopersicum DNA, chromosome 8, clone: C08HBa0195L01, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015068264.1	6e-79	growth-regulating factor 3-like isoform X1
Refseq	XP_027771148.1	6e-79	growth-regulating factor 3-like isoform X2
Swissprot	Q9FJB8	3e-26	GRF7_ARATH; Growth-regulating factor 7
TrEMBL	A0A3Q7ILA5	1e-115	A0A3Q7ILA5_SOLLC; Uncharacterized protein
STRING	Solyc08g068760.1.1	1e-115	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7032	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	2e-26	growth-regulating factor 7

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]