PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim08g074300.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 342aa MW: 38431.9 Da PI: 7.1589

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim08g074300.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.2	5.4e-56	11	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhP+deel+++yL +k++++++ ++++i +vd++k+ePwdLp k+k +e+ewyfFs+rd+ky+tg r+nrat+sgyWk+tgkdke Sopim08g074300.0.1 11 LPPGFRFHPSDEELITYYLMNKISDSNNFIARAIGDVDLNKSEPWDLPGKAKMGEEEWYFFSQRDRKYPTGVRTNRATNSGYWKTTGKDKE 101 79***********************999999***********999999********************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++s + elvg+kktLvfykgrap+gekt+Wvmheyrl Sopim08g074300.0.1 102 IFS-NLELVGMKKTLVFYKGRAPRGEKTNWVMHEYRL 137 .999***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.45E-64	6	159	IPR003441	NAC domain
PROSITE profile	PS51005	61.781	11	159	IPR003441	NAC domain
Pfam	PF02365	2.6E-29	12	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MEGEVKEEID LPPGFRFHPS DEELITYYLM NKISDSNNFI ARAIGDVDLN KSEPWDLPGK 60 AKMGEEEWYF FSQRDRKYPT GVRTNRATNS GYWKTTGKDK EIFSNLELVG MKKTLVFYKG 120 RAPRGEKTNW VMHEYRLHSK SSYTTHKQDE WIVCRVFQKS NAGGKRYSTN NNTLRIHVNP 180 YTTLDQINPN TICISSQIMM PQVEHNTFQL AMGKSSSSSA HTMINHPEIQ EVFRGVSSSS 240 SSNLMNLHTT LQSQMNYNLG GGNGFTISGL NLNLGGGGAT TSQPGPPPPR PRQDVSSSHV 300 MMTTHDDQAG YGEDMSSGNV MNRFMVLENS SHDLDNCWGN Y*

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MEGEVKEEID LPPGFRFHPS DEELITYYLM NKISDSNNFI ARAIGDVDLN KSEPWDLPGK  60
AKMGEEEWYF FSQRDRKYPT GVRTNRATNS GYWKTTGKDK EIFSNLELVG MKKTLVFYKG  120
RAPRGEKTNW VMHEYRLHSK SSYTTHKQDE WIVCRVFQKS NAGGKRYSTN NNTLRIHVNP  180
YTTLDQINPN TICISSQIMM PQVEHNTFQL AMGKSSSSSA HTMINHPEIQ EVFRGVSSSS  240
SSNLMNLHTT LQSQMNYNLG GGNGFTISGL NLNLGGGGAT TSQPGPPPPR PRQDVSSSHV  300
MMTTHDDQAG YGEDMSSGNV MNRFMVLENS SHDLDNCWGN Y*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-55	8	165	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-55	8	165	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-55	8	165	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-55	8	165	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-55	8	165	17	174	NAC domain-containing protein 19
3swm_B	2e-55	8	165	17	174	NAC domain-containing protein 19
3swm_C	2e-55	8	165	17	174	NAC domain-containing protein 19
3swm_D	2e-55	8	165	17	174	NAC domain-containing protein 19
3swp_A	2e-55	8	165	17	174	NAC domain-containing protein 19
3swp_B	2e-55	8	165	17	174	NAC domain-containing protein 19
3swp_C	2e-55	8	165	17	174	NAC domain-containing protein 19
3swp_D	2e-55	8	165	17	174	NAC domain-containing protein 19
4dul_A	2e-55	8	165	14	171	NAC domain-containing protein 19
4dul_B	2e-55	8	165	14	171	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004246074.1	0.0	NAC domain-containing protein 79
TrEMBL	M1CW69	0.0	M1CW69_SOLTU; Uncharacterized protein
STRING	Solyc08g074300.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	6e-93	NAC domain containing protein 38