PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g077060.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LSD
Protein Properties Length: 146aa    MW: 15147.7 Da    PI: 7.7401
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g077060.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.31.3e-132852125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        C+gCr+lL YP GA+sV+Ca+C++V
  Sopim08g077060.0.1 28 CSGCRNLLLYPVGATSVCCAVCNAV 52
                        ************************9 PP
2zf-LSD146.84.9e-156791125
             zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                        CggC+tlL+Y rGA+sV+C++C+tV
  Sopim08g077060.0.1 67 CGGCHTLLMYIRGATSVQCSCCHTV 91
                        ************************9 PP
3zf-LSD140.64e-13105129125
             zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                         Cg+C+ lL+Y +GA+sV+Ca+C++V
  Sopim08g077060.0.1 105 CGNCHMLLMYQYGARSVKCAVCNFV 129
                         ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.101.4E-522127No hitNo description
TIGRFAMsTIGR010539.8E-132555IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-102852IPR005735Zinc finger, LSD1-type
SuperFamilySSF486951.03E-628111IPR011031Multihaem cytochrome
TIGRFAMsTIGR010538.7E-156493IPR005735Zinc finger, LSD1-type
PfamPF069431.3E-126791IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.9E-10102132IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-12105129IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MPVPLAPYPT PPTPFTPPSN GTQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT  60
EMAQLVCGGC HTLLMYIRGA TSVQCSCCHT VNLAMEANQV AHVNCGNCHM LLMYQYGARS  120
VKCAVCNFVT SVGVATSTAE QKFNS*
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004245885.11e-101protein LOL1 isoform X2
SwissprotQ93ZB19e-81LOL1_ARATH; Protein LOL1
TrEMBLA0A3Q7HU072e-99A0A3Q7HU07_SOLLC; Uncharacterized protein
STRINGSolyc08g077060.2.11e-100(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16792467
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.33e-67lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]