PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim08g079100.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

YABBY

Protein Properties

Length: 217aa MW: 24172.2 Da PI: 7.6678

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim08g079100.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	220.9	3.8e-68	17	179	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas.qllaaeshldeslkeelleelkveeenlksnvekeesasts 95 seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll l ++ + h s ++ll+e +++ n+ +n++++ ++ + Sopim08g079100.0.1 17 PSEQLCYVHCNVCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPGWLLPSTnHHHHHFGHTYFSPSHNLLDEISNATPNFLMNQSNSAHEFVQ 107 68*************************************95544433133333333333333347777777777777776666666666 PP YABBY 96 vsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ + +++pr+pp v+rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl Sopim08g079100.0.1 108 LPA----RPGFDDLPRPPPvVNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIQFGL 179 655....55788999999989***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-65	17	179	IPR006780	YABBY protein
SuperFamily	SSF47095	2.23E-8	120	173	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	6.6E-5	127	173	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MSSSNSLSLD HLPPPPPSEQ LCYVHCNVCD TVLAVSVPCT SLFKTVTVRC GHCTNLLPGW 60 LLPSTNHHHH HFGHTYFSPS HNLLDEISNA TPNFLMNQSN SAHEFVQLPA RPGFDDLPRP 120 PPVVNRPPEK RQRVPSAYNR FIKEEIQRIK AGNPDISHRE AFSAAAKNWA HFPHIQFGLM 180 PDQTVKRTNV RQQDGEDVLT KDGLFNTSAN VSVSPY*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667762	0.0	KJ667762.1 Solanum virginianum YAB1 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001353824.1	1e-161	axial regulator YABBY1b
Swissprot	A2X7Q3	2e-78	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	2e-78	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	A0A2I7ZG64	1e-159	A0A2I7ZG64_9SOLN; YABBY3
TrEMBL	A0A2I7ZG66	1e-159	A0A2I7ZG66_SOLCE; YABBY3
TrEMBL	A0A2I7ZG72	1e-159	A0A2I7ZG72_SOLPI; YABBY3
TrEMBL	K4CNR9	1e-159	K4CNR9_SOLLC; YABBY3
STRING	Solyc08g079100.2.1	1e-160	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	7e-70	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]