PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim09g008030.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 202aa MW: 21246 Da PI: 8.0766

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim09g008030.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.4	1.5e-35	43	120	6	83
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas 83 ++++++hTkv+gR+RRvR++a+caar+F+L++eLG+ +d++tieWLl++a+pai+++tgt++ +a+++++ s++ s Sopim09g008030.0.1 43 SSSKDRHTKVNGRGRRVRMPALCAARVFQLTKELGHRTDGETIEWLLRNAEPAIIAATGTGTVPATQVTTTSENIPLS 120 579*********************************************************999997774443333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.5E-31	44	123	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.319	45	99	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MGSEIVVSGA ISGVGNGSVN SETNGKTALA VVPTKKKNAL SVSSSKDRHT KVNGRGRRVR 60 MPALCAARVF QLTKELGHRT DGETIEWLLR NAEPAIIAAT GTGTVPATQV TTTSENIPLS 120 QSQPSVLAPL TRATPVSGFP VGGGFFSMTP QSQPNCRLDL CQPSLEFSGN AYRHMPFTAL 180 LLQPVTADDG EEKVAEEDEK Q*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF647604	0.0	EF647604.1 Solanum lycopersicum chromosome 9 clone C09HBa0116C14, complete sequence.
GenBank	HG975521	0.0	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001233821.2	1e-147	TCP transcription factor 19
Swissprot	Q9SJK7	4e-41	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A3Q7HYI7	1e-145	A0A3Q7HYI7_SOLLC; Uncharacterized protein
STRING	Solyc09g008030.1.1	1e-146	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	2e-35	TCP family protein