PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g008390.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 132aa    MW: 15545 Da    PI: 10.4296
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g008390.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.31.1e-151764148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W  eEde+l+ +++ lG ++W++ a+  g++R++k+c++rw +yl
  Sopim09g008390.0.1 17 KGPWLDEEDERLAYVIAILGERRWDALAKASGLRRSGKSCRLRWMNYL 64
                        79********************************************97 PP
2Myb_DNA-binding54.33e-1773115448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          T++E+ l++++ kqlG++ W++Ia+ ++ gRt++++k++w+++l
  Sopim09g008390.0.1  73 ITQDEEHLIIKLQKQLGNK-WSKIAKQLP-GRTDNEIKNYWRSHL 115
                         59*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.0551264IPR017930Myb domain
SuperFamilySSF466892.24E-2715111IPR009057Homeodomain-like
SMARTSM007172.2E-121666IPR001005SANT/Myb domain
PfamPF002492.1E-131764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-201871IPR009057Homeodomain-like
CDDcd001673.94E-81964No hitNo description
PROSITE profilePS5129426.19965119IPR017930Myb domain
SMARTSM007173.6E-1469117IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-2572118IPR009057Homeodomain-like
PfamPF002493.3E-1573115IPR001005SANT/Myb domain
CDDcd001676.00E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MDFTLQLVTM EEEKLRKGPW LDEEDERLAY VIAILGERRW DALAKASGLR RSGKSCRLRW  60
MNYLRPNLKH GHITQDEEHL IIKLQKQLGN KWSKIAKQLP GRTDNEIKNY WRSHLRKKTL  120
ICEQGSIRHS P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-27151192105MYB PROTO-ONCOGENE PROTEIN
1h88_C6e-271511956159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-271511956159MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-27151192105C-Myb DNA-Binding Domain
1msf_C1e-27151192105C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00406DAPTransfer from AT3G53200Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755212e-73HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015167290.14e-85PREDICTED: myb-related protein MYBAS1-like
SwissprotQ9SCP19e-52MYB27_ARATH; Transcription factor MYB27
TrEMBLA0A3Q7HYP87e-84A0A3Q7HYP8_SOLLC; Uncharacterized protein
STRINGSolyc09g008390.1.13e-92(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.14e-54myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]