PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g010160.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 250aa    MW: 28944.4 Da    PI: 8.9819
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g010160.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.42.2e-43181501128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                         lp G+rF Pt+eelv +yL++k++gk+ ++++vi+ v+iy+++P++Lp+     +k+++++w+fF++ + ++a+g r++r t++gyWkatg
  Sopim09g010160.0.1  18 LPTGYRFYPTEEELVEFYLRNKLDGKRDDIQRVIPVVNIYHHNPSELPEmageVIKHDTEQWFFFIPIQDREARGGRPTRLTTQGYWKATG 108
                         699***************************99***************9546766666788******************************* PP

                 NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         +   v+s+ +++ +g+k+t+vfykgrap+g+kt+W m+ey++
  Sopim09g010160.0.1 109 TPGFVYSSnNNRIIGCKRTMVFYKGRAPNGKKTQWKMNEYKA 150
                         ******9867778***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-486181IPR003441NAC domain
PROSITE profilePS5100546.56718181IPR003441NAC domain
PfamPF023654.1E-2219149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MENNVYDNYN HNNNNNVLPT GYRFYPTEEE LVEFYLRNKL DGKRDDIQRV IPVVNIYHHN  60
PSELPEMAGE VIKHDTEQWF FFIPIQDREA RGGRPTRLTT QGYWKATGTP GFVYSSNNNR  120
IIGCKRTMVF YKGRAPNGKK TQWKMNEYKA TTHGQPSLIT NNHITNLKLQ HEFSLCRVYK  180
KSKCVRAFDR RPAGSGLLLP PHQPLINNNN NNNNNIGTSS SSTGIIQPME NYNDLSETPL  240
WDFEDWNFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-281818215169Stress-induced transcription factor NAC1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755211e-174HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246880.20.0NAC domain-containing protein 90-like isoform X1
SwissprotQ9FMR36e-71NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A2G2YPI71e-130A0A2G2YPI7_CAPAN; NAC domain-containing protein 90
STRINGSolyc09g010160.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24942357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.16e-71NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]