PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g014690.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 175aa    MW: 19972.6 Da    PI: 8.793
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g014690.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.51e-289108199
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +Caa k++r++C+++C+lap fp+++ ++f+nv +l+ +s+++++l+++ ++e++ +++++l+ eA++r ++PvyG++++ +kl+ q+e++
  Sopim09g014690.0.1   9 KCAAFKYQRKRCQENCPLAPFFPSNKFEDFKNVSRLYKVSTIIEMLNSVaDNEKKAKMVETLILEAKIRSENPVYGSIAIQNKLKLQIEET 99 
                         5***********************************************9455558999********************************* PP

              DUF260  91 kaelallke 99 
                          +e++l+k+
  Sopim09g014690.0.1 100 MKEIDLVKK 108
                         ****99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.088110IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-299107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MNDADAKGKC AAFKYQRKRC QENCPLAPFF PSNKFEDFKN VSRLYKVSTI IEMLNSVADN  60
EKKAKMVETL ILEAKIRSEN PVYGSIAIQN KLKLQIEETM KEIDLVKKTT DYFKELRKRA  120
FFPKKNEETS TSGTQSFQGH KSDSTLEKAT SITENLTNQD VEKDRVHFND NDGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-1651047105LOB family transfactor Ramosa2.1
5ly0_B7e-1651047105LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010326135.21e-118LOB domain-containing protein 24-like
TrEMBLA0A3Q7HYK92e-72A0A3Q7HYK9_SOLLC; Uncharacterized protein
STRINGSolyc09g014690.1.11e-125(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28661752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26660.11e-23LOB domain-containing protein 24